# ========= [INFO] ==========
# Mut inCB: not accepter mutation in BC
# Mut inMS: 2
# ReadIn  : /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.seq
# seq_deb : TCAGGTG
# seq_fin : CGTGG
# MS_seq : AT
# excl : C,G
# nom  : AT20
# log  : /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.AT20.seq.log
# =============================
#
# condiGrep: TCAG.TG.+.GTGG|TCAG.TG.+C.TGG|TCAG.TG.+CG.GG|TCAG.TG.+CGT.G|TCAG.TG.+CGTG.|TCAGG.G.+.GTGG|TCAGG.G.+C.TGG|TCAGG.G.+CG.GG|TCAGG.G.+CGT.G|TCAGG.G.+CGTG.|TCAGGT..+.GTGG|TCAGGT..+C.TGG|TCAGGT..+CG.GG|TCAGGT..+CGT.G|TCAGGT..+CGTG.
# condiSet1: s/^.*TCAG.TG//g;s/^.*TCAGG.G//g;s/^.*TCAGGT.//g
# condiSet2: s/.GTGG.*$//g;s/C.TGG.*$//g;s/CG.GG.*$//g;s/CGT.G.*$//g;s/CGTG..*$//g
# Pre-filtre ExactEnd: 52833 /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.AT20.seq.exactEachEnd.MS
# Pre-filtre MutInEnd: 93 /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.AT20.seq.Max1MutEachEnd.MS
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.AT20.seq.MS.all ] 52789 lines.
#
#> SophieMS_GenotyperMS_unProfil.r /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.AT20.seq.MS.all.nb AT
#> SophieMS_GenotyperMS_unProfil_v2.r /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.AT20.seq.exactEachEnd.MS.MS_noMut.nb /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.AT20.seq.exactEachEnd.MS.MS_Mut.nb /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.AT20.seq.Max1MutEachEnd.MS.MS_noMut.nb /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.AT20.seq.Max1MutEachEnd.MS.MS_Mut.nb  AT  /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.AT20.seq.MS
# =============[ END ]===========
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.AT20.seq.MS.all.nb ]
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.AT20.seq.MS.all.profil.png ]
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.AT20.seq.MS.profil_v2.png ]
#
#nbRead	nbMSall	nb_EndnoMut_MSnoMut	nb_EndnoMut_MSMut	nb_EndMut_MSnoMut	nb_EndMut_MSMut
215669	52789	52501	210	47	31
